Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004666.1 Corchorus olitorius cultivar O-4 contig04682, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 735

Length: 1225
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.20


Found at i:635 original size:15 final size:17

Alignment explanation


    Indices: 606--637  Score: 50
    Period size: 15  Copynumber: 2.0  Consensus size: 17

        596 GTGCTCACGC

                             
        606 TGGTGGCCGCGTGGCTG
          1 TGGTGGCCGCGTGGCTG

                             
        623 TGGTGG-CGC-TGGCTG
          1 TGGTGGCCGCGTGGCTG

        638 AACCGGCAGG


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  15    6  0.40
  16    3  0.20
  17    6  0.40

ACGTcount: A:0.00, C:0.22, G:0.53, T:0.25


Consensus pattern (17 bp):   
TGGTGGCCGCGTGGCTG
Done.