Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004673.1 Corchorus olitorius cultivar O-4 contig04689, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1906
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30


Found at i:1111 original size:11 final size:11

Alignment explanation


    Indices: 1095--1121  Score: 54
    Period size: 11  Copynumber: 2.5  Consensus size: 11

       1085 TTTAATTTTT

                       
       1095 AATGTTAACTG
          1 AATGTTAACTG

                       
       1106 AATGTTAACTG
          1 AATGTTAACTG

                 
       1117 AATGT
          1 AATGT

       1122 AAAATTAATA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   16  1.00

ACGTcount: A:0.37, C:0.07, G:0.19, T:0.37


Consensus pattern (11 bp):   
AATGTTAACTG
Done.