Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004675.1 Corchorus olitorius cultivar O-4 contig04691, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 754

Length: 1257
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37


Found at i:636 original size:20 final size:20

Alignment explanation


    Indices: 611--710  Score: 200
    Period size: 20  Copynumber: 5.0  Consensus size: 20

        601 TGGCTATAAG

                                
        611 TCAACTCTTGTCTATCTTTT
          1 TCAACTCTTGTCTATCTTTT

                                
        631 TCAACTCTTGTCTATCTTTT
          1 TCAACTCTTGTCTATCTTTT

                                
        651 TCAACTCTTGTCTATCTTTT
          1 TCAACTCTTGTCTATCTTTT

                                
        671 TCAACTCTTGTCTATCTTTT
          1 TCAACTCTTGTCTATCTTTT

                                
        691 TCAACTCTTGTCTATCTTTT
          1 TCAACTCTTGTCTATCTTTT

        711 GAGGATAATT


Statistics
Matches: 80,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   80  1.00

ACGTcount: A:0.15, C:0.25, G:0.05, T:0.55


Consensus pattern (20 bp):   
TCAACTCTTGTCTATCTTTT

Done.