Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004684.1 Corchorus olitorius cultivar O-4 contig04700, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 727

Length: 1212
ACGTcount: A:0.18, C:0.32, G:0.28, T:0.21


Found at i:678 original size:12 final size:12

Alignment explanation


    Indices: 661--686  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        651 CGTTTGCGGC

                        
        661 CTGTCTGTTTTG
          1 CTGTCTGTTTTG

                        
        673 CTGTCTGTTTTG
          1 CTGTCTGTTTTG

              
        685 CT
          1 CT

        687 TTCCGTTTTA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.00, C:0.19, G:0.23, T:0.58


Consensus pattern (12 bp):   
CTGTCTGTTTTG
Done.