Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004696.1 Corchorus olitorius cultivar O-4 contig04712, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 676

Length: 1128
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30


Found at i:809 original size:19 final size:19

Alignment explanation


    Indices: 785--822  Score: 67
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        775 CTAACTCTTT

                         *     
        785 AGTATCTGTTCTTGTTTGA
          1 AGTATCTGTTCTTATTTGA

                               
        804 AGTATCTGTTCTTATTTGA
          1 AGTATCTGTTCTTATTTGA

        823 TACATTGTAG


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.18, C:0.11, G:0.18, T:0.53


Consensus pattern (19 bp):   
AGTATCTGTTCTTATTTGA
Done.