Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000470.1 Corchorus olitorius cultivar O-4 contig00470, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6577
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35


Found at i:5338 original size:29 final size:29

Alignment explanation


    Indices: 5296--5354  Score: 109
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       5286 AATAAAGAGC

                                         
       5296 TTATATCAAAGCCTAATGTTAACATGAGG
          1 TTATATCAAAGCCTAATGTTAACATGAGG

                     *                   
       5325 TTATATCAAGGCCTAATGTTAACATGAGG
          1 TTATATCAAAGCCTAATGTTAACATGAGG

             
       5354 T
          1 T

       5355 CCTTAATTGA


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32


Consensus pattern (29 bp):   
TTATATCAAAGCCTAATGTTAACATGAGG
Done.