Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000471.1 Corchorus olitorius cultivar O-4 contig00471, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 601

Length: 1003
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:647 original size:12 final size:13

Alignment explanation


    Indices: 610--651  Score: 50
    Period size: 13  Copynumber: 3.3  Consensus size: 13

        600 TTTGTCAGTC

                   *     
        610 TAAACCAGGATAA
          1 TAAACCAAGATAA

              *     *    
        623 TATACCAATATAA
          1 TAAACCAAGATAA

                         
        636 -AAACCAAGATAA
          1 TAAACCAAGATAA

                
        648 TAAA
          1 TAAA

        652 ACGAAAAATA


Statistics
Matches: 23,  Mismatches: 5, Indels: 2
        0.77            0.17        0.07

Matches are distributed among these distances:
  12   10  0.43
  13   13  0.57

ACGTcount: A:0.60, C:0.14, G:0.07, T:0.19


Consensus pattern (13 bp):   
TAAACCAAGATAA
Done.