Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004729.1 Corchorus olitorius cultivar O-4 contig04745, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 617

Length: 1029
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31


Found at i:280 original size:19 final size:19

Alignment explanation


    Indices: 256--294  Score: 60
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        246 GCTTTTACTC

                   *      *    
        256 TATTTTATAAATTTCTAAT
          1 TATTTTAGAAATTTATAAT

                               
        275 TATTTTAGAAATTTATAAT
          1 TATTTTAGAAATTTATAAT

             
        294 T
          1 T

        295 TCTGGATTAT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56


Consensus pattern (19 bp):   
TATTTTAGAAATTTATAAT

Found at i:368 original size:13 final size:14

Alignment explanation


    Indices: 330--372  Score: 77
    Period size: 14  Copynumber: 3.1  Consensus size: 14

        320 TATATGATAT

                 *        
        330 ATGATAATTTTTGA
          1 ATGATGATTTTTGA

                          
        344 ATGATGATTTTTGA
          1 ATGATGATTTTTGA

                          
        358 ATGATGATTTTTGA
          1 ATGATGATTTTTGA

             
        372 A
          1 A

        373 CTTTCCATAT


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  14   28  1.00

ACGTcount: A:0.33, C:0.00, G:0.19, T:0.49


Consensus pattern (14 bp):   
ATGATGATTTTTGA
Done.