Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004730.1 Corchorus olitorius cultivar O-4 contig04746, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 828

Length: 1381
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33


Found at i:546 original size:109 final size:109

Alignment explanation


    Indices: 355--556  Score: 368
    Period size: 109  Copynumber: 1.9  Consensus size: 109

        345 ATGTTTTCAG

                    *                                                        
        355 AAGGAGGTGAGAACATGAAAATTACAGCAACTAAAGCAAGTACTTCTAAAGTTCAAAACGTTATT
          1 AAGGAGGTAAGAACATGAAAATTACAGCAACTAAAGCAAGTACTTCTAAAGTTCAAAACGTTATT

                                                        
        420 CGCATCGTCATCTCGAACCAGCGCTAATAGAAATGAAATACAAA
         66 CGCATCGTCATCTCGAACCAGCGCTAATAGAAATGAAATACAAA

                               *                                             
        464 AAGGAGGTAAGAACATGAAGATTACAGCAACTAAAGCAAGTACTTCTAAAGTTCAAAACGTTATT
          1 AAGGAGGTAAGAACATGAAAATTACAGCAACTAAAGCAAGTACTTCTAAAGTTCAAAACGTTATT

              *     *                   
        529 CGTATCGTTATCTCGAACCAGCGCTAAT
         66 CGCATCGTCATCTCGAACCAGCGCTAAT

        557 CTTTAAATAG


Statistics
Matches: 89,  Mismatches: 4, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
 109   89  1.00

ACGTcount: A:0.41, C:0.18, G:0.18, T:0.23


Consensus pattern (109 bp):   
AAGGAGGTAAGAACATGAAAATTACAGCAACTAAAGCAAGTACTTCTAAAGTTCAAAACGTTATT
CGCATCGTCATCTCGAACCAGCGCTAATAGAAATGAAATACAAA
Done.