Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004761.1 Corchorus olitorius cultivar O-4 contig04778, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 609

Length: 1015
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.25


Found at i:990 original size:27 final size:26

Alignment explanation


    Indices: 949--1001  Score: 97
    Period size: 27  Copynumber: 2.0  Consensus size: 26

        939 AAAATACTAT

                                      
        949 GCCAAGTAGTATAGGAGTCAGTAGGC
          1 GCCAAGTAGTATAGGAGTCAGTAGGC

                                       
        975 GCCAAGTAAGTATAGGAGTCAGTAGGC
          1 GCCAAGT-AGTATAGGAGTCAGTAGGC

       1002 TTGCGAGCAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  26    7  0.27
  27   19  0.73

ACGTcount: A:0.32, C:0.15, G:0.34, T:0.19


Consensus pattern (26 bp):   
GCCAAGTAGTATAGGAGTCAGTAGGC
Done.