Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004769.1 Corchorus olitorius cultivar O-4 contig04786, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 640

Length: 1068
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.27


Found at i:975 original size:20 final size:20

Alignment explanation


    Indices: 950--1009  Score: 120
    Period size: 20  Copynumber: 3.0  Consensus size: 20

        940 TGCCTATGCT

                                
        950 CAAGCATAGAGTTGATTGAA
          1 CAAGCATAGAGTTGATTGAA

                                
        970 CAAGCATAGAGTTGATTGAA
          1 CAAGCATAGAGTTGATTGAA

                                
        990 CAAGCATAGAGTTGATTGAA
          1 CAAGCATAGAGTTGATTGAA

       1010 ATATGCCAAT


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   40  1.00

ACGTcount: A:0.40, C:0.10, G:0.25, T:0.25


Consensus pattern (20 bp):   
CAAGCATAGAGTTGATTGAA
Done.