Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004776.1 Corchorus olitorius cultivar O-4 contig04793, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 696

Length: 1161
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.28


Found at i:592 original size:19 final size:19

Alignment explanation


    Indices: 568--606  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        558 ACCCTTACCC

                               
        568 TGCAATTGGCTATTTCCTT
          1 TGCAATTGGCTATTTCCTT

                               
        587 TGCAATTGGCTATTTCCTT
          1 TGCAATTGGCTATTTCCTT

             
        606 T
          1 T

        607 CTTCTAGTCC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.15, C:0.21, G:0.15, T:0.49


Consensus pattern (19 bp):   
TGCAATTGGCTATTTCCTT
Done.