Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004784.1 Corchorus olitorius cultivar O-4 contig04801, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 651

Length: 1085
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.19


Found at i:1074 original size:11 final size:11

Alignment explanation


    Indices: 1058--1083  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

       1048 TTGACCGCCG

                       
       1058 GCGTGTTTTGA
          1 GCGTGTTTTGA

                       
       1069 GCGTGTTTTGA
          1 GCGTGTTTTGA

                
       1080 GCGT
          1 GCGT

       1084 TC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.08, C:0.12, G:0.38, T:0.42


Consensus pattern (11 bp):   
GCGTGTTTTGA
Done.