Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004788.1 Corchorus olitorius cultivar O-4 contig04805, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 883

Length: 1473
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36


Found at i:1183 original size:44 final size:43

Alignment explanation


    Indices: 1111--1195  Score: 143
    Period size: 44  Copynumber: 2.0  Consensus size: 43

       1101 TCTAAAAAGT

                                  *                    
       1111 CTTTTTAGGATGATCCTAAAAAGTCTTTGGCCTGGTGGTAGGA
          1 CTTTTTAGGATGATCCTAAAAAATCTTTGGCCTGGTGGTAGGA

                                           *          
       1154 CTTTTTAGGATGATACCTAAAAAATCTTTGGTCTGGTGGTAG
          1 CTTTTTAGGATGAT-CCTAAAAAATCTTTGGCCTGGTGGTAG

       1196 ATTGCTGGAC


Statistics
Matches: 39,  Mismatches: 2, Indels: 1
        0.93            0.05        0.02

Matches are distributed among these distances:
  43   14  0.36
  44   25  0.64

ACGTcount: A:0.25, C:0.13, G:0.26, T:0.36


Consensus pattern (43 bp):   
CTTTTTAGGATGATCCTAAAAAATCTTTGGCCTGGTGGTAGGA
Done.