Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004794.1 Corchorus olitorius cultivar O-4 contig04811, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 639

Length: 1065
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22


Found at i:978 original size:15 final size:15

Alignment explanation


    Indices: 952--1008  Score: 60
    Period size: 15  Copynumber: 3.8  Consensus size: 15

        942 TTGAACTCTT

                   *       
        952 ATAGATAGTAGACGG
          1 ATAGATAATAGACGG

             *           * 
        967 ACAGATAATAGACCG
          1 ATAGATAATAGACGG

                  *   *    
        982 ATAGATTATACACGG
          1 ATAGATAATAGACGG

                  *     
        997 ATAGATTATAGA
          1 ATAGATAATAGA

       1009 TTGGCAATGC


Statistics
Matches: 34,  Mismatches: 8, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  15   34  1.00

ACGTcount: A:0.44, C:0.11, G:0.23, T:0.23


Consensus pattern (15 bp):   
ATAGATAATAGACGG
Done.