Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004796.1 Corchorus olitorius cultivar O-4 contig04813, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 834

Length: 1391
ACGTcount: A:0.17, C:0.33, G:0.35, T:0.15


Found at i:983 original size:9 final size:9

Alignment explanation


    Indices: 969--993  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

        959 AGTGGCGCGT

                     
        969 GCGCTGCTG
          1 GCGCTGCTG

                     
        978 GCGCTGCTG
          1 GCGCTGCTG

                   
        987 GCGCTGC
          1 GCGCTGC

        994 GCGACGCCTC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.00, C:0.36, G:0.44, T:0.20


Consensus pattern (9 bp):   
GCGCTGCTG
Done.