Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000480.1 Corchorus olitorius cultivar O-4 contig00480, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 655

Length: 1092
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37


Found at i:982 original size:30 final size:30

Alignment explanation


    Indices: 948--1009  Score: 90
    Period size: 30  Copynumber: 2.1  Consensus size: 30

        938 TTCAATATCT

                               *  *        
        948 TTTTATAATT-ATGAAATAGAATTTTAATGA
          1 TTTTATAATTAAT-AAATAAAAGTTTAATGA

                                          
        978 TTTTATAATTAATAAATAAAAGTTTAATGA
          1 TTTTATAATTAATAAATAAAAGTTTAATGA

              
       1008 TT
          1 TT

       1010 AAAAATTATA


Statistics
Matches: 29,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  30   27  0.93
  31    2  0.07

ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47


Consensus pattern (30 bp):   
TTTTATAATTAATAAATAAAAGTTTAATGA
Done.