Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004800.1 Corchorus olitorius cultivar O-4 contig04817, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 681

Length: 1136
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28


Found at i:208 original size:19 final size:19

Alignment explanation


    Indices: 184--221  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        174 CACACACATA

                               
        184 TAGATAGTAGGAAATAAAG
          1 TAGATAGTAGGAAATAAAG

                               
        203 TAGATAGTAGGAAATAAAG
          1 TAGATAGTAGGAAATAAAG

        222 GCCTCTCCCT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.53, C:0.00, G:0.26, T:0.21


Consensus pattern (19 bp):   
TAGATAGTAGGAAATAAAG

Found at i:980 original size:14 final size:14

Alignment explanation


    Indices: 961--988  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

        951 TGCAGACGAT

                          
        961 CGGGAATTGACTGG
          1 CGGGAATTGACTGG

                          
        975 CGGGAATTGACTGG
          1 CGGGAATTGACTGG

        989 TAAGAAATCC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.21, C:0.14, G:0.43, T:0.21


Consensus pattern (14 bp):   
CGGGAATTGACTGG
Done.