Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004802.1 Corchorus olitorius cultivar O-4 contig04819, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 762

Length: 1270
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.33


Found at i:351 original size:18 final size:18

Alignment explanation


    Indices: 328--363  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        318 CGTGTACTTT

                              
        328 TACGTGCACCACTGCGCC
          1 TACGTGCACCACTGCGCC

                              
        346 TACGTGCACCACTGCGCC
          1 TACGTGCACCACTGCGCC

        364 CATTCCTACG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.17, C:0.44, G:0.22, T:0.17


Consensus pattern (18 bp):   
TACGTGCACCACTGCGCC
Done.