Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000481.1 Corchorus olitorius cultivar O-4 contig00481, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 736

Length: 1228
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.39


Found at i:741 original size:36 final size:36

Alignment explanation


    Indices: 694--763  Score: 131
    Period size: 36  Copynumber: 1.9  Consensus size: 36

        684 GAGATTTTGG

                         *                      
        694 AGAAATATGATAATCAAAATTACAAAAAATGTAATA
          1 AGAAATATGATAACCAAAATTACAAAAAATGTAATA

                                              
        730 AGAAATATGATAACCAAAATTACAAAAAATGTAA
          1 AGAAATATGATAACCAAAATTACAAAAAATGTAA

        764 GGTTATTGAA


Statistics
Matches: 33,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  36   33  1.00

ACGTcount: A:0.61, C:0.07, G:0.09, T:0.23


Consensus pattern (36 bp):   
AGAAATATGATAACCAAAATTACAAAAAATGTAATA
Done.