Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000483.1 Corchorus olitorius cultivar O-4 contig00483, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 913

Length: 1523
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.42


Found at i:430 original size:31 final size:31

Alignment explanation


    Indices: 392--453  Score: 97
    Period size: 31  Copynumber: 2.0  Consensus size: 31

        382 GAGTTTTGTA

                         *     *           
        392 AAACTTTTGAATCGCCTATTATACCCTTATT
          1 AAACTTTTGAATCACCTATGATACCCTTATT

                                *          
        423 AAACTTTTGAATCACCTATGGTACCCTTATT
          1 AAACTTTTGAATCACCTATGATACCCTTATT

        454 TTTCGAATAT


Statistics
Matches: 28,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  31   28  1.00

ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40


Consensus pattern (31 bp):   
AAACTTTTGAATCACCTATGATACCCTTATT

Found at i:591 original size:93 final size:93

Alignment explanation


    Indices: 489--673  Score: 298
    Period size: 93  Copynumber: 2.0  Consensus size: 93

        479 TTATTTAAAT

                         *                              *           *        
        489 TTTTATAGTTTTAGTCAACTAAAAACTCTATTTTTATTTAATTACATCTAATATCCTTATAACTA
          1 TTTTATAGTTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCGTATAACTA

                        *  *      *     
        554 TTTTATTTTTACCATTTTACTATTTTAC
         66 TTTTATTTTTACAATATTACTAATTTAC

                                                           *             *   
        582 TTTTATAGTTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATGTAATATCCGTATACCTA
          1 TTTTATAGTTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCGTATAACTA

                                       
        647 TTTTATTTTTACAATATTACTAATTTA
         66 TTTTATTTTTACAATATTACTAATTTA

        674 ATTAAAAAGT


Statistics
Matches: 84,  Mismatches: 8, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  93   84  1.00

ACGTcount: A:0.33, C:0.13, G:0.03, T:0.51


Consensus pattern (93 bp):   
TTTTATAGTTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCGTATAACTA
TTTTATTTTTACAATATTACTAATTTAC
Done.