Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004848.1 Corchorus olitorius cultivar O-4 contig04865, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 741

Length: 1235
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26


Found at i:1207 original size:20 final size:21

Alignment explanation


    Indices: 1177--1218  Score: 77
    Period size: 20  Copynumber: 2.0  Consensus size: 21

       1167 CCGGTCACTT

                                 
       1177 GAAGAATCACGAGCTATTAAA
          1 GAAGAATCACGAGCTATTAAA

                                 
       1198 GAAG-ATCACGAGCTATTAAA
          1 GAAGAATCACGAGCTATTAAA

             
       1218 G
          1 G

       1219 CTCTTAACTC


Statistics
Matches: 21,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  20   17  0.81
  21    4  0.19

ACGTcount: A:0.45, C:0.14, G:0.21, T:0.19


Consensus pattern (21 bp):   
GAAGAATCACGAGCTATTAAA
Done.