Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000485.1 Corchorus olitorius cultivar O-4 contig00485, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 704

Length: 1174
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.32


Found at i:285 original size:27 final size:26

Alignment explanation


    Indices: 225--286  Score: 65
    Period size: 27  Copynumber: 2.3  Consensus size: 26

        215 AAATTTCCAT

                         *             
        225 TATTTTAATAATGGAATAATTAAAATA
          1 TATTTTAATAATGCAAT-ATTAAAATA

                                         
        252 T-TATTTAATAATGCCAAT-TTAGAAATA
          1 TAT-TTTAATAATG-CAATATTA-AAATA

                    
        279 TATTTTAA
          1 TATTTTAA

        287 AAAAAAGGTA


Statistics
Matches: 30,  Mismatches: 1, Indels: 8
        0.77            0.03        0.21

Matches are distributed among these distances:
  26    4  0.13
  27   22  0.73
  28    4  0.13

ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44


Consensus pattern (26 bp):   
TATTTTAATAATGCAATATTAAAATA
Done.