Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004866.1 Corchorus olitorius cultivar O-4 contig04883, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 672

Length: 1121
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.35


Found at i:530 original size:32 final size:33

Alignment explanation


    Indices: 470--532  Score: 110
    Period size: 33  Copynumber: 1.9  Consensus size: 33

        460 CTTTCAAATC

                                             
        470 TTTCAAAGAATTAGCAAGCCAAAACAAAATATT
          1 TTTCAAAGAATTAGCAAGCCAAAACAAAATATT

                *                          
        503 TTTCGAAGAATTAGCAAG-CAAAACAAAATA
          1 TTTCAAAGAATTAGCAAGCCAAAACAAAATA

        533 GCTTCAAAGA


Statistics
Matches: 29,  Mismatches: 1, Indels: 1
        0.94            0.03        0.03

Matches are distributed among these distances:
  32   12  0.41
  33   17  0.59

ACGTcount: A:0.52, C:0.14, G:0.11, T:0.22


Consensus pattern (33 bp):   
TTTCAAAGAATTAGCAAGCCAAAACAAAATATT
Done.