Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004877.1 Corchorus olitorius cultivar O-4 contig04895, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 632

Length: 1054
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32


Found at i:91 original size:23 final size:22

Alignment explanation


    Indices: 65--115  Score: 75
    Period size: 22  Copynumber: 2.3  Consensus size: 22

         55 ATTCAAAAGG

                                   
         65 TTCTTGACAGCTTACAATAAGTT
          1 TTCTT-ACAGCTTACAATAAGTT

                  * *             
         88 TTCTTATATCTTACAATAAGTT
          1 TTCTTACAGCTTACAATAAGTT

                  
        110 TTCTTA
          1 TTCTTA

        116 TATATATGCT


Statistics
Matches: 26,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
  22   21  0.81
  23    5  0.19

ACGTcount: A:0.29, C:0.16, G:0.08, T:0.47


Consensus pattern (22 bp):   
TTCTTACAGCTTACAATAAGTT

Found at i:101 original size:22 final size:22

Alignment explanation


    Indices: 75--118  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

         65 TTCTTGACAG

                                  
         75 CTTACAATAAGTTTTCTTATAT
          1 CTTACAATAAGTTTTCTTATAT

                                  
         97 CTTACAATAAGTTTTCTTATAT
          1 CTTACAATAAGTTTTCTTATAT

        119 ATATGCTGTC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.32, C:0.14, G:0.05, T:0.50


Consensus pattern (22 bp):   
CTTACAATAAGTTTTCTTATAT

Found at i:215 original size:49 final size:49

Alignment explanation


    Indices: 159--256  Score: 196
    Period size: 49  Copynumber: 2.0  Consensus size: 49

        149 CTTAGCCTTT

                                                             
        159 TTTTATTCAATTCAATTAGATGTTAATGTAAATGAACCATAACTATGTA
          1 TTTTATTCAATTCAATTAGATGTTAATGTAAATGAACCATAACTATGTA

                                                             
        208 TTTTATTCAATTCAATTAGATGTTAATGTAAATGAACCATAACTATGTA
          1 TTTTATTCAATTCAATTAGATGTTAATGTAAATGAACCATAACTATGTA

        257 AACCTATTCC


Statistics
Matches: 49,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  49   49  1.00

ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41


Consensus pattern (49 bp):   
TTTTATTCAATTCAATTAGATGTTAATGTAAATGAACCATAACTATGTA
Done.