Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004895.1 Corchorus olitorius cultivar O-4 contig04913, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 653

Length: 1089
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33


Found at i:274 original size:13 final size:13

Alignment explanation


    Indices: 256--280  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        246 TACGTATTCC

                         
        256 ATGAAAAAAAAAA
          1 ATGAAAAAAAAAA

                        
        269 ATGAAAAAAAAA
          1 ATGAAAAAAAAA

        281 TGACATACTC


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08


Consensus pattern (13 bp):   
ATGAAAAAAAAAA
Done.