Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004914.1 Corchorus olitorius cultivar O-4 contig04932, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 690

Length: 1151
ACGTcount: A:0.19, C:0.33, G:0.32, T:0.17


Found at i:355 original size:9 final size:9

Alignment explanation


    Indices: 341--365  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

        331 ATGAGGTGTC

                     
        341 CGATTCGTT
          1 CGATTCGTT

                     
        350 CGATTCGTT
          1 CGATTCGTT

                   
        359 CGATTCG
          1 CGATTCG

        366 ATTCTTGTGG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.12, C:0.24, G:0.24, T:0.40


Consensus pattern (9 bp):   
CGATTCGTT
Done.