Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004926.1 Corchorus olitorius cultivar O-4 contig04944, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 713

Length: 1189
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36


Found at i:981 original size:18 final size:18

Alignment explanation


    Indices: 958--994  Score: 74
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        948 ATGATGTCTG

                              
        958 AATTATGGTGGATTTCTC
          1 AATTATGGTGGATTTCTC

                              
        976 AATTATGGTGGATTTCTC
          1 AATTATGGTGGATTTCTC

             
        994 A
          1 A

        995 TGGTTTGTTA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.24, C:0.11, G:0.22, T:0.43


Consensus pattern (18 bp):   
AATTATGGTGGATTTCTC
Done.