Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004934.1 Corchorus olitorius cultivar O-4 contig04952, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 618

Length: 1031
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29


Found at i:353 original size:18 final size:18

Alignment explanation


    Indices: 330--367  Score: 76
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        320 GTCTACCTCA

                              
        330 GGTGTAATCCCATAAACT
          1 GGTGTAATCCCATAAACT

                              
        348 GGTGTAATCCCATAAACT
          1 GGTGTAATCCCATAAACT

              
        366 GG
          1 GG

        368 CTCCATTTGA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26


Consensus pattern (18 bp):   
GGTGTAATCCCATAAACT
Done.