Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004937.1 Corchorus olitorius cultivar O-4 contig04955, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 871

Length: 1453
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31


Found at i:302 original size:22 final size:22

Alignment explanation


    Indices: 274--320  Score: 94
    Period size: 22  Copynumber: 2.1  Consensus size: 22

        264 ACCGGGGAAG

                                  
        274 TTAACTCTGTCTTTTCCTTTTC
          1 TTAACTCTGTCTTTTCCTTTTC

                                  
        296 TTAACTCTGTCTTTTCCTTTTC
          1 TTAACTCTGTCTTTTCCTTTTC

               
        318 TTA
          1 TTA

        321 TGGATGAGGA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   25  1.00

ACGTcount: A:0.11, C:0.26, G:0.04, T:0.60


Consensus pattern (22 bp):   
TTAACTCTGTCTTTTCCTTTTC
Done.