Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004938.1 Corchorus olitorius cultivar O-4 contig04956, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 850

Length: 1417
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32


Found at i:1189 original size:25 final size:25

Alignment explanation


    Indices: 1154--1203  Score: 91
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       1144 TATAGTCTTA

                  *                  
       1154 AGAACTCCGACCGAAGGGAGACAAT
          1 AGAACTACGACCGAAGGGAGACAAT

                                     
       1179 AGAACTACGACCGAAGGGAGACAAT
          1 AGAACTACGACCGAAGGGAGACAAT

       1204 GGCTGTTTGA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.42, C:0.22, G:0.28, T:0.08


Consensus pattern (25 bp):   
AGAACTACGACCGAAGGGAGACAAT
Done.