Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004944.1 Corchorus olitorius cultivar O-4 contig04962, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 755

Length: 1259
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28


Found at i:1047 original size:25 final size:25

Alignment explanation


    Indices: 1019--1068  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       1009 CCTGAGCCTT

                                     
       1019 GCTAAGAATATCACCATAGGTTTTC
          1 GCTAAGAATATCACCATAGGTTTTC

                                     
       1044 GCTAAGAATATCACCATAGGTTTTC
          1 GCTAAGAATATCACCATAGGTTTTC

       1069 TTAGTCACCC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32


Consensus pattern (25 bp):   
GCTAAGAATATCACCATAGGTTTTC
Done.