Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004956.1 Corchorus olitorius cultivar O-4 contig04975, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 813

Length: 1356
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31


Found at i:114 original size:6 final size:6

Alignment explanation


    Indices: 103--129  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

         93 TTCCTCCATA

                                           
        103 ATCTGT ATCTGT ATCTGT ATCTGT ATC
          1 ATCTGT ATCTGT ATCTGT ATCTGT ATC

        130 ATTAGAAATA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48


Consensus pattern (6 bp):   
ATCTGT

Done.