Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004959.1 Corchorus olitorius cultivar O-4 contig04978, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 870

Length: 1451
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.34


Found at i:455 original size:25 final size:25

Alignment explanation


    Indices: 421--471  Score: 102
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        411 GTTGATCCGG

                                     
        421 TGTTTTCTTTGCCACCATCTACTTC
          1 TGTTTTCTTTGCCACCATCTACTTC

                                     
        446 TGTTTTCTTTGCCACCATCTACTTC
          1 TGTTTTCTTTGCCACCATCTACTTC

             
        471 T
          1 T

        472 CATGACTGCA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   26  1.00

ACGTcount: A:0.12, C:0.31, G:0.08, T:0.49


Consensus pattern (25 bp):   
TGTTTTCTTTGCCACCATCTACTTC
Done.