Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000496.1 Corchorus olitorius cultivar O-4 contig00496, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 669

Length: 1115
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27


Found at i:774 original size:21 final size:21

Alignment explanation


    Indices: 750--808  Score: 100
    Period size: 21  Copynumber: 2.8  Consensus size: 21

        740 CACCTGGTTG

                  *    *         
        750 GCCTGAGCACCCATGTCTTAA
          1 GCCTGATCACCTATGTCTTAA

                                 
        771 GCCTGATCACCTATGTCTTAA
          1 GCCTGATCACCTATGTCTTAA

                             
        792 GCCTGATCACCTATGTC
          1 GCCTGATCACCTATGTC

        809 CTCATGGTGG


Statistics
Matches: 36,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   36  1.00

ACGTcount: A:0.22, C:0.32, G:0.17, T:0.29


Consensus pattern (21 bp):   
GCCTGATCACCTATGTCTTAA
Done.