Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000005.1 Corchorus olitorius cultivar O-4 contig00005, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 888

Length: 1481
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38


Found at i:1243 original size:36 final size:36

Alignment explanation


    Indices: 1189--1258  Score: 104
    Period size: 36  Copynumber: 1.9  Consensus size: 36

       1179 TTCAATAACC

                         *      *               
       1189 TTACATCTTTTATGATTTTGGTTATCATATTTCTTA
          1 TTACATCTTTTATAATTTTGATTATCATATTTCTTA

                  *    *                      
       1225 TTACATTTTTTGTAATTTTGATTATCATATTTCT
          1 TTACATCTTTTATAATTTTGATTATCATATTTCT

       1259 CCAAAATCTC


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  36   30  1.00

ACGTcount: A:0.23, C:0.10, G:0.07, T:0.60


Consensus pattern (36 bp):   
TTACATCTTTTATAATTTTGATTATCATATTTCTTA
Done.