Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000500.1 Corchorus olitorius cultivar O-4 contig00500, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 706

Length: 1177
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.36


Found at i:103 original size:18 final size:17

Alignment explanation


    Indices: 74--122  Score: 57
    Period size: 15  Copynumber: 2.9  Consensus size: 17

         64 GTAGTGATCA

                               
         74 TATAACTAATAATAATTGT
          1 TATAA-TAATAATAA-TGT

                             
         93 TATAATAATAATAA-GT
          1 TATAATAATAATAATGT

                     *     
        109 T-TAATAATTATAAT
          1 TATAATAATAATAAT

        123 AAGAAGATGT


Statistics
Matches: 28,  Mismatches: 1, Indels: 5
        0.82            0.03        0.15

Matches are distributed among these distances:
  15   11  0.39
  16    3  0.11
  18    9  0.32
  19    5  0.18

ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43


Consensus pattern (17 bp):   
TATAATAATAATAATGT

Done.