Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005003.1 Corchorus olitorius cultivar O-4 contig05023, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 606

Length: 1011
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29


Found at i:259 original size:25 final size:25

Alignment explanation


    Indices: 231--280  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        221 CCTGAGCCTT

                                     
        231 GCTAAGAATATCACCATAGGTTTTC
          1 GCTAAGAATATCACCATAGGTTTTC

                                     
        256 GCTAAGAATATCACCATAGGTTTTC
          1 GCTAAGAATATCACCATAGGTTTTC

        281 TTAGTCACCC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32


Consensus pattern (25 bp):   
GCTAAGAATATCACCATAGGTTTTC
Done.