Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005008.1 Corchorus olitorius cultivar O-4 contig05028, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 619

Length: 1033
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31


Found at i:911 original size:21 final size:21

Alignment explanation


    Indices: 887--950  Score: 128
    Period size: 21  Copynumber: 3.0  Consensus size: 21

        877 TGGGGGCACC

                                 
        887 AAGGTATTTGCCTTAGTCAGT
          1 AAGGTATTTGCCTTAGTCAGT

                                 
        908 AAGGTATTTGCCTTAGTCAGT
          1 AAGGTATTTGCCTTAGTCAGT

                                 
        929 AAGGTATTTGCCTTAGTCAGT
          1 AAGGTATTTGCCTTAGTCAGT

             
        950 A
          1 A

        951 GTGAGAGGGA


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   43  1.00

ACGTcount: A:0.25, C:0.14, G:0.23, T:0.38


Consensus pattern (21 bp):   
AAGGTATTTGCCTTAGTCAGT
Done.