Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005009.1 Corchorus olitorius cultivar O-4 contig05029, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 691

Length: 1153
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.17


Found at i:499 original size:9 final size:9

Alignment explanation


    Indices: 485--514  Score: 51
    Period size: 9  Copynumber: 3.3  Consensus size: 9

        475 CGCCTGTGCC

                     
        485 GCACCAGCA
          1 GCACCAGCA

                     
        494 GCACCAGCA
          1 GCACCAGCA

              *      
        503 GCGCCAGCA
          1 GCACCAGCA

               
        512 GCA
          1 GCA

        515 ACGTGCCGCC


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   9   19  1.00

ACGTcount: A:0.30, C:0.43, G:0.27, T:0.00


Consensus pattern (9 bp):   
GCACCAGCA
Done.