Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005023.1 Corchorus olitorius cultivar O-4 contig05043, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 802

Length: 1338
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32


Found at i:505 original size:3 final size:3

Alignment explanation


    Indices: 497--538  Score: 75
    Period size: 3  Copynumber: 13.7  Consensus size: 3

        487 TGGGTTGGCC

                                                                   
        497 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ATAT AA
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AA

        539 CATAAAAGTC


Statistics
Matches: 38,  Mismatches: 0, Indels: 2
        0.95            0.00        0.05

Matches are distributed among these distances:
   3   35  0.92
   4    3  0.08

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (3 bp):   
AAT

Done.