Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005036.1 Corchorus olitorius cultivar O-4 contig05057, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 858

Length: 1431
ACGTcount: A:0.15, C:0.34, G:0.35, T:0.16


Found at i:1054 original size:27 final size:27

Alignment explanation


    Indices: 994--1055  Score: 70
    Period size: 27  Copynumber: 2.3  Consensus size: 27

        984 CCTGGGCCAG

                      *           **  *
        994 GCCCAGGGGTGCGGCCAGGCCGGTGAT
          1 GCCCAGGGGTACGGCCAGGCCGAAGAC

                               *       
       1021 GCCCAGGGGTACGGCCAGGGCGAAGAC
          1 GCCCAGGGGTACGGCCAGGCCGAAGAC

              *     
       1048 GCGCAGGG
          1 GCCCAGGG

       1056 CGCGGCGCAA


Statistics
Matches: 29,  Mismatches: 6, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  27   29  1.00

ACGTcount: A:0.16, C:0.29, G:0.48, T:0.06


Consensus pattern (27 bp):   
GCCCAGGGGTACGGCCAGGCCGAAGAC
Done.