Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005040.1 Corchorus olitorius cultivar O-4 contig05061, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 738

Length: 1231
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27


Found at i:43 original size:18 final size:18

Alignment explanation


    Indices: 20--54  Score: 70
    Period size: 18  Copynumber: 1.9  Consensus size: 18

         10 GGAATACACA

                              
         20 AGAGAAAGAAGAAACTAG
          1 AGAGAAAGAAGAAACTAG

                             
         38 AGAGAAAGAAGAAACTA
          1 AGAGAAAGAAGAAACTA

         55 AAGGGCGGGT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.63, C:0.06, G:0.26, T:0.06


Consensus pattern (18 bp):   
AGAGAAAGAAGAAACTAG

Found at i:333 original size:26 final size:26

Alignment explanation


    Indices: 304--357  Score: 108
    Period size: 26  Copynumber: 2.1  Consensus size: 26

        294 CCTAAACGGG

                                      
        304 ATCAGGAAGGGCCGAGCTAATCAATC
          1 ATCAGGAAGGGCCGAGCTAATCAATC

                                      
        330 ATCAGGAAGGGCCGAGCTAATCAATC
          1 ATCAGGAAGGGCCGAGCTAATCAATC

              
        356 AT
          1 AT

        358 TAAAGCTGAG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   28  1.00

ACGTcount: A:0.35, C:0.22, G:0.26, T:0.17


Consensus pattern (26 bp):   
ATCAGGAAGGGCCGAGCTAATCAATC
Done.