Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005059.1 Corchorus olitorius cultivar O-4 contig05080, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 692

Length: 1154
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33


Found at i:292 original size:19 final size:19

Alignment explanation


    Indices: 268--308  Score: 82
    Period size: 19  Copynumber: 2.2  Consensus size: 19

        258 AACTCACCTC

                               
        268 ATATAGTATGAATGAAGAT
          1 ATATAGTATGAATGAAGAT

                               
        287 ATATAGTATGAATGAAGAT
          1 ATATAGTATGAATGAAGAT

               
        306 ATA
          1 ATA

        309 ATCATACTAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   22  1.00

ACGTcount: A:0.49, C:0.00, G:0.20, T:0.32


Consensus pattern (19 bp):   
ATATAGTATGAATGAAGAT

Done.