Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000507.1 Corchorus olitorius cultivar O-4 contig00507, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 676

Length: 1128
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26


Found at i:739 original size:49 final size:47

Alignment explanation


    Indices: 651--781  Score: 149
    Period size: 49  Copynumber: 2.7  Consensus size: 47

        641 AATTTTATCC

                     *                  *                 ** 
        651 AAAAATTGATAAAAAGTGC-GATGAAAATTAAAAGATCAATTTTGTCTT
          1 AAAAATTGAGAAAAAGTGCAG-T-AAAAATAAAAGATCAATTTTGTAGT

                        *                      *             
        699 AAAAATTGAGAAGAAGATGCAAGTAAAAATAAAAGTTCAATTTTGTAGT
          1 AAAAATTGAGAAAAAG-TGC-AGTAAAAATAAAAGATCAATTTTGTAGT

                                      *        
        748 AAAAATTGAGAAAAAGTGCAGT-AAAGTAAAAGAT
          1 AAAAATTGAGAAAAAGTGCAGTAAAAATAAAAGAT

        782 TGCTTGGAGT


Statistics
Matches: 71,  Mismatches: 9, Indels: 8
        0.81            0.10        0.09

Matches are distributed among these distances:
  46   10  0.14
  47    3  0.04
  48   17  0.24
  49   39  0.55
  50    1  0.01
  51    1  0.01

ACGTcount: A:0.52, C:0.05, G:0.18, T:0.26


Consensus pattern (47 bp):   
AAAAATTGAGAAAAAGTGCAGTAAAAATAAAAGATCAATTTTGTAGT
Done.