Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005072.1 Corchorus olitorius cultivar O-4 contig05093, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 738

Length: 1231
ACGTcount: A:0.14, C:0.32, G:0.35, T:0.18


Found at i:902 original size:18 final size:17

Alignment explanation


    Indices: 879--921  Score: 52
    Period size: 18  Copynumber: 2.4  Consensus size: 17

        869 GAGCGAGATG

                               
        879 TCGCCGT-GCGTGCAGACA
          1 TCGCCGTCGCGTG--GACA

                              
        897 TCGCCGATCGCGTGGACA
          1 TCGCCG-TCGCGTGGACA

                   
        915 TCGCCGT
          1 TCGCCGT

        922 TGCCGTCGAG


Statistics
Matches: 23,  Mismatches: 0, Indels: 5
        0.82            0.00        0.18

Matches are distributed among these distances:
  17    1  0.04
  18   16  0.70
  19    1  0.04
  20    5  0.22

ACGTcount: A:0.14, C:0.35, G:0.33, T:0.19


Consensus pattern (17 bp):   
TCGCCGTCGCGTGGACA
Done.