Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005121.1 Corchorus olitorius cultivar O-4 contig05142, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 651

Length: 1086
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.28


Found at i:1060 original size:18 final size:18

Alignment explanation


    Indices: 1037--1086  Score: 100
    Period size: 18  Copynumber: 2.8  Consensus size: 18

       1027 GGGGTTCAGG

                              
       1037 ATCTATGTCTTCCATTGA
          1 ATCTATGTCTTCCATTGA

                              
       1055 ATCTATGTCTTCCATTGA
          1 ATCTATGTCTTCCATTGA

                          
       1073 ATCTATGTCTTCCA
          1 ATCTATGTCTTCCA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   32  1.00

ACGTcount: A:0.22, C:0.24, G:0.10, T:0.44


Consensus pattern (18 bp):   
ATCTATGTCTTCCATTGA
Done.