Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005134.1 Corchorus olitorius cultivar O-4 contig05155, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 719

Length: 1199
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24


Found at i:657 original size:20 final size:20

Alignment explanation


    Indices: 632--672  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        622 AGTGCCAAAT

                                
        632 TTTAGAAGGATGATCACTTA
          1 TTTAGAAGGATGATCACTTA

                                
        652 TTTAGAAGGATGATCACTTA
          1 TTTAGAAGGATGATCACTTA

             
        672 T
          1 T

        673 CTGCCTAAAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.34, C:0.10, G:0.20, T:0.37


Consensus pattern (20 bp):   
TTTAGAAGGATGATCACTTA
Done.