Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005135.1 Corchorus olitorius cultivar O-4 contig05156, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 685

Length: 1142
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25


Found at i:221 original size:28 final size:28

Alignment explanation


    Indices: 181--237  Score: 114
    Period size: 28  Copynumber: 2.0  Consensus size: 28

        171 CCGGGCTAGA

                                        
        181 ACGAAATGCTTACGCTATCAATTAAGTC
          1 ACGAAATGCTTACGCTATCAATTAAGTC

                                        
        209 ACGAAATGCTTACGCTATCAATTAAGTC
          1 ACGAAATGCTTACGCTATCAATTAAGTC

             
        237 A
          1 A

        238 GGATCCGCTG


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   29  1.00

ACGTcount: A:0.37, C:0.21, G:0.14, T:0.28


Consensus pattern (28 bp):   
ACGAAATGCTTACGCTATCAATTAAGTC
Done.