Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005152.1 Corchorus olitorius cultivar O-4 contig05173, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 762

Length: 1271
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.31


Found at i:906 original size:16 final size:16

Alignment explanation


    Indices: 885--916  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

        875 AGCTCTTATA

                            
        885 TGATTTCTAGTAAAAT
          1 TGATTTCTAGTAAAAT

                            
        901 TGATTTCTAGTAAAAT
          1 TGATTTCTAGTAAAAT

        917 CCAGAACCGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44


Consensus pattern (16 bp):   
TGATTTCTAGTAAAAT
Done.